Cacatoo - mRNA, eiwit, glucose

by bramvandijk88

HTML

<!-- 
  ###########################################################################################
    This is a JSFiddle example of "Cacatoo". This HTML page does not contain the code itself,
    but determines where the grids, graphs, buttons, etc are placed. The real code is in the 
    Javascript Tab. I recommend enabling "Tabs (Columns)" under the settings in the top-right. 
  ###########################################################################################
-->

<html>
  <script src="https://bramvandijk88.github.io/cacatoo/scripts/cacatoo.js"></script>
  <script src="https://bramvandijk88.github.io/cacatoo/scripts/all.js"></script>
  <!-- Dependencies
    <link rel="stylesheet" href="style.css">        <!-- Set style sheet -->

  <head>
    <title>Cacatoo examples</title>
  </head>


  <script>
    /*-------------------------End user-defined code ---------------------*/

  </script>

  <body onload="cacatoo()">
   

    <div class="content" id="canvas_holder"> </div>
    <div class="content" id="graph_holder"> </div>
    <div class="content" id="form_holder"></div>
   

  </body>

</html>

CSS

body {
  font-family: 'Lucida Sans', 'Lucida Sans Regular', 'Lucida Grande', 'Lucida Sans Unicode', Geneva, Verdana, sans-serif;
  background-color: #f0f0f0;
  margin: 10px;
  font-size: 13px;
}

/* Style the header */
.header {
  background-color: rgb(111, 146, 170);
  display: block;
  border: 0px solid #f0f0f0;
  box-shadow: 3px 1px 0px #24242444;
  border-radius: 15px 15px 0px 0px;
  padding: 10px;
  text-align: center;
  font-size: 20px;
  font-weight: 900;
  color: #ffffff;
}


.logos {
  z-index: -1;
  vertical-align: middle;
  display: inline-block;
  padding-left: 10px;
  padding-top: 10px;
}

.example_card {
  width: 220px;
  height: 220px;
  background-color: rgb(151, 183, 204);
  box-shadow: rgba(100, 100, 111, 0.1) 20px 7px 29px 0px;
  /* font-weight: bold; */
  color: rgb(229, 239, 245);
  font-size: 12px;
  line-height: 25px;
  margin: 25px;
  padding: 20px;
  padding-bottom: 40px;
  padding-top: 10px;
  border-radius: 0px 0px 0px 0px;
  display: inline-block;
  transition: all 100ms ease-out 200ms;
  transition-delay: 0s;
}

.example_card_img {
  width: 100%;
  height: 100%;
  border-radius: 0px 0px 0px 0px;
  background-position: 45% 50%;
  background-repeat: no-repeat;
  background-size: cover;
}

.example_card:hover {
  background-color: rgb(151, 183, 204);
  font-size: 12px;
  color: black;
  border-radius: 30px 0px 30px 0px;
  box-shadow: rgba(100, 100, 111, 0.3) 0px 0px 29px 0px;
}

.example_card:active {
  background-color: rgb(151, 183, 204);
  font-size: 12px;
  padding-top: 11px;
  height: 199px;
  color: black;
  box-shadow: rgba(100, 100, 111, 0.3) 0px 0px 29px 0px;
}


/* Content (grid, graphs, sliders) */
.content {
  text-align: center;
  /*border-bottom: 1px dashed #88888844;*/
  /*background-color: #000000;*/
  padding: 5px;
}

/* Output div */
.output {
  border-radius: 8px 8px 8px 8px;
  margin: 30px;
  height: 300px;
  overflow-y: scroll;
  font-size: 11px;
  text-align: left;
  /*background-color: #000000;*/
  color: #00FF00;
...

JavaScript

/*-----------------------Start user-defined code ---------------------*/
		
    let sim;
	  var glucose_diff = 0.00
		var reactions = 0
    function cacatoo() {

        let config = {
            title: "Expressie op een grid",
            description: "",
            maxtime: 100000,
            ncol: 28,
            nrow: 28,		            // dimensions of the grid to build
            wrap: [false, false],         // Wrap boundary [COLS, ROWS]   
            scale: 7,				    // scale of the grid (nxn pixels per grid cell
            show_gridname: true,
				    fpsmeter: false,
            graph_interval: 1,
            graph_update: 5
        }

        sim = new Simulation(config)

        sim.makeGridmodel("turing")


	// Initialise the left 3 cols with predators and prey by setting the state via the named ODE 'lotka'
        sim.reset = function(){
				for (let i = 0; i < sim.turing.nc; i++)
            for (let j = 0; j < sim.turing.nr; j++)
						{
                sim.turing.grid[i][j].M = 0
   							sim.turing.grid[i][j].E = 0
							  sim.turing.grid[i][j].G = 0
						}
					sim.turing.grid[14][14].G=100
				}

				sim.reset()
	sim.createDisplay_continuous({model:"turing", property:"G", label:"Glucose", // Createa a display for a continuous variable (ODE state for external resources)
                            minval:0, maxval:10, fill:"inferno", radius:3.5,drawdots: true, decimals:1, nticks:2}) 
      
        sim.createDisplay_continuous({model:"turing", property:"M", label:"mRNA", // Createa a display for a continuous variable (ODE state for external resources)
                            minval:0, maxval:2, fill:"red", radius:3.5,drawdots: true,decimals:1, nticks:2}) 
			  sim.createDisplay_continuous({model:"turing", property:"E", label:"Eiwit", // Createa a display for a continuous variable (ODE state for external resources)
                            minval:0, maxval:4, fill:"green", radius:3.5,drawdots: true,decimals:1, nticks:2}) 
			  //...